Package: campsis 1.5.4
campsis: Generic PK/PD Simulation Platform CAMPSIS
A generic, easy-to-use and intuitive pharmacokinetic/pharmacodynamic (PK/PD) simulation platform based on R packages 'rxode2' and 'mrgsolve'. CAMPSIS provides an abstraction layer over the underlying processes of writing a PK/PD model, assembling a custom dataset and running a simulation. CAMPSIS has a strong dependency to the R package 'campsismod', which allows to read/write a model from/to files and adapt it further on the fly in the R environment. Package 'campsis' allows the user to assemble a dataset in an intuitive manner. Once the user’s dataset is ready, the package is in charge of preparing the simulation, calling 'rxode2' or 'mrgsolve' (at the user's choice) and returning the results, for the given model, dataset and desired simulation settings.
Authors:
campsis_1.5.4.tar.gz
campsis_1.5.4.zip(r-4.5)campsis_1.5.4.zip(r-4.4)campsis_1.5.4.zip(r-4.3)
campsis_1.5.4.tgz(r-4.4-any)campsis_1.5.4.tgz(r-4.3-any)
campsis_1.5.4.tar.gz(r-4.5-noble)campsis_1.5.4.tar.gz(r-4.4-noble)
campsis_1.5.4.tgz(r-4.4-emscripten)campsis_1.5.4.tgz(r-4.3-emscripten)
campsis.pdf |campsis.html✨
campsis/json (API)
NEWS
# Install 'campsis' in R: |
install.packages('campsis', repos = c('https://calvagone.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/calvagone/campsis/issues
- nhanes - NHANES database (demographics and body measure data combined, from 2017-2018).
Last updated 3 months agofrom:54fdd0670f. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 29 2024 |
R-4.5-win | NOTE | Oct 29 2024 |
R-4.5-linux | NOTE | Oct 29 2024 |
R-4.4-win | NOTE | Oct 29 2024 |
R-4.4-mac | NOTE | Oct 29 2024 |
R-4.3-win | NOTE | Oct 29 2024 |
R-4.3-mac | NOTE | Oct 29 2024 |
Exports:applyScenarioArmBinomialDistributionBolusBootstrapBootstrapDistributioncampsis_handlerConstantDistributionconvertTimeCovariateDatasetDatasetConfigdaysDeclareDiscreteDistributionDoseAdaptationdosingOnlyEtaDistributionEventEventCovariateEventsFixedDistributionFunctionDistributiongenerateIIVgenerateIIV_getAvailableTimeUnitsgetCovariatesgetEventCovariatesgetFixedCovariatesgetIOVsgetOccasionsgetSeedForDatasetExportgetSeedForIterationgetSeedForParametersSamplinggetSplittingConfigurationgetTimesgetTimeVaryingCovariatesHardwarehoursInfusionIOVLogNormalDistributionminutesmonthsNOCBNormalDistributionObservationsobsOnlyOccasionOutfunParameterDistributionPIProgressretrieveParameterValuesamplescatterPlotScenarioScenariossecondssetLabelsetSubjectsSettingssetupPlanDefaultsetupPlanSequentialshadedPlotsimulateSimulationProgressSolverspaghettiPlotstandardiseTimeTimeVaryingCovariateUniformDistributionVPCvpcPlotweeksyears
Dependencies:assertthatbitbit64campsismodclicliprcodetoolscolorspacecpp11crayondigestdplyrfansifarverfurrrfuturegenericsggplot2globalsgluegtablehmsisobandlabelinglatticelifecyclelistenvmagrittrMASSMatrixmgcvmunsellnlmeparallellypillarpkgconfigplyrprettyunitsprogressprogressrpurrrR6RColorBrewerRcppreadrrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr
Bioavailability
Rendered fromv04_bioavailability.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-05-04
Complex PK/PD models from literature
Rendered fromv14_complex_pkpd_models.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2022-08-31
Started: 2021-11-12
Covariates
Rendered fromv03_covariates.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-04-28
Create your dataset
Rendered fromv01_dataset.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2021-10-04
Started: 2021-04-28
Get started with CAMPSIS
Rendered fromcampsis.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-07-09
Infusions
Rendered fromv06_infusions.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-05-04
Initial conditions
Rendered fromv08_initial_conditions.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-05-04
Inter-occasion variability
Rendered fromv07_iov.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-05-04
Interruption events
Rendered fromv13_events.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-12-23
Lag time
Rendered fromv05_lag_time.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-05-04
PK/PD model library
Rendered fromv15_pkpd_model_library.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-12-23
Progress bar
Rendered fromv16_progress_bar.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2023-03-23
Replicate your study
Rendered fromv10_replicate_study.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-10-04
Run your simulation in parallel
Rendered fromv17_run_simulation_in_parallel.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2023-03-23
Scenarios
Rendered fromv11_scenarios.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-10-04
Simple dose adaptations
Rendered fromv09_dose_adaptation.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-10-04
Time-varying covariates
Rendered fromv12_time_varying_covariates.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2023-10-16
Started: 2021-12-23
Variability levels
Rendered fromv02_uncertainties.Rmd
usingknitr::rmarkdown
on Oct 29 2024.Last update: 2024-02-16
Started: 2021-04-28